crosshap from my former PhD student Jacob Marsh is now out in Bioinformatics!
It's an R-based tool that visualises phenotype-haplotype-associations in a region of interest. We used it to explore population diversity around specific candidate genes; follow-up papers are under peer review.
A local haplotyping visualization toolbox to capture major patterns
of co-inheritance between clusters of linked variants, whilst connecting findings
to phenotypic and demographic traits across individuals.
